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#include <stdio.h>
#include <stdlib.h>

#include <TROOT.h>
#include <TH1D.h>
#include <TH2D.h>
#include <TH3D.h>
#include <TCanvas.h>
#include <TStyle.h>
#include <TSystem.h>
#include <TFile.h>
#include <TDirectory.h>
#include <TPaveText.h>

#include <iostream>
#include <string>

#include "base.h"
#include "projection.h"
#include "savetoroot.h"

int projection(int runNumber, int save) {

  int HAPDnumber; //Number of HAPD: 0, 1, 2 or 3!

  int direction, nx, ny;
  char name[128];
  char pdfname[128];
  char buf[256];
  float pNoise;
  int color[6] = {1,2,4,6,8,9};

  char hname[0xF];

  const char * serialNumber = getSN(runNumber);
  std::string serialNumberTemp = serialNumber;
  std::string HAPDserialNumber,FEBserialNumber;

  GRID m = mapping();
  int vrstaPisave = 82;

  TCanvas * c, * c2;
  TPad * pad1, * pad2, * pad3, * pad4, * c2pad1, * c2pad2;
  TPad * VirtualPad2[12];
  TLine * l;
  TPaveText * info, * axisName;
  TAxis * axis;
  TH3D * h;
  TH2D * slice[12], * sum; //take the right slice from 3D histogram
  TH1D * p[12], * zamenjan[12];

  /********** GLOBALNE **********/
    gStyle->SetOptStat(0);
    //gStyle->SetOptTitle(1);
    gStyle->SetTitleFontSize(.15);
   
  TDirectory *CurrentDirectory = gDirectory->CurrentDirectory();

  for(HAPDnumber=0;HAPDnumber<4;HAPDnumber++){

    // Change code here for runs where one or more modules were disabled during measurement
    //if(HAPDnumber==0) continue;
    //if(HAPDnumber==1) continue;
    //if(HAPDnumber==2) continue;
    //if(HAPDnumber==3) continue;
 
    SaveToRootInit();
           
    //std::cout << serialNumberTemp << std::endl;
    FEBserialNumber = serialNumberTemp.substr(0,serialNumberTemp.find(","));
    serialNumberTemp.erase(0,FEBserialNumber.length()+1);
    if(!FEBserialNumber.compare("noserial")) continue;
    HAPDserialNumber = FEBserialNumber.substr(0,FEBserialNumber.find("/"));
    FEBserialNumber.erase(0,FEBserialNumber.find("/")+1);
 
    sprintf(hname,"hxy%d_0;1",HAPDnumber);
    printf("%s \t %s \t %s \n",FEBserialNumber.c_str(),HAPDserialNumber.c_str(),hname);

    //~ h = (TH3D *) gDirectory->Get(hname);
    h = (TH3D *) CurrentDirectory->Get(hname);

    /********** SMER MERITVE **********/
    h->GetZaxis()->SetRange(1,1);
    nx = h->GetNbinsX();
    ny = h->GetNbinsY();
    if (nx>=ny) direction = 0;
    else direction = 1;

    printf("Direction = %d\n", direction);

    /********** CANVAS **********/
    if (!direction) {
      sprintf(buf,"%04d_%s_px",runNumber,HAPDserialNumber.c_str());
      c = new TCanvas(buf,buf,0,0,1200,1200);
    } else {
      sprintf(buf,"%04d_%s_py",runNumber,HAPDserialNumber.c_str());
      c = new TCanvas(buf,buf,0,0,1200,1200);
    }

    pad1 = new TPad("pad1","Title",0.05,0.965,0.95,0.99,0,0);
      pad1->SetFillStyle(4000);
      pad1->Draw();

    pad2 = new TPad("pad2","Graphs",0.05,.05,.95,0.97,0,0);
      pad2->SetFillStyle(4000);
      pad2->Draw();

    pad3 = new TPad("pad3","AxisTitle",0.57,0.03,0.92,0.0470,0,0);
      pad3->SetFillStyle(4000);
      pad3->Draw();

   
    pad4 = new TPad("pad4","Lines",0.07,0.05,1,0.97,0,0);
      pad4->SetFillStyle(4000);
      pad4->Draw();
      pad4->cd();

      l = new TLine();
      l->SetLineColor(kBlue);
      l->DrawLineNDC(0,.5003,.085,.5003);
      l->DrawLineNDC(0.84,.5003,.9,.5003);
      l->DrawLineNDC(0.452,0,.452,0.992);
   
    /********** PAD 1 **********/
    pad1->cd();
      info = new TPaveText(0.2,0,0.8,1,"ndc");
      info->SetBorderSize(0);
      info->SetFillColor(4000);
      info->SetTextSize(0.8);
      info->SetTextAlign(22);
   
      sprintf(name,"%s,  Nx: %d,  Ny: %d", serialNumber, nx, ny);
      info->AddText(name);
      //info->Draw();

    /********** PAD3 **********/
    pad3->cd();
      axisName = new TPaveText(0.2,0,0.8,1,"ndc");
      axisName->SetBorderSize(0);
      axisName->SetFillColor(4000);
      axisName->SetTextSize(.7);
      axisName->SetTextFont(vrstaPisave);
      axisName->SetTextAlign(22);
     
      sprintf(name,"Incident light position (mm)");
      axisName->AddText(name);
      axisName->Draw();
   
    /********** PAD2 **********/
    pad2->cd();
    pad2->Divide(1,12,0,0);

    for (int i=0;i<12;i++) {
      if (!direction) {
        pad2->cd(11 - i+1);
        VirtualPad2[11 - i] = (TPad *)(pad2->cd(11 - i+1)); //Tole nastaviš zato, da lahko daš Log skalo
        VirtualPad2[11 - i]->SetLogy(1);
        //VirtualPad2[11 - i]->SetLeftMargin(.05);
        //VirtualPad2[11 - i]->SetRightMargin(.05);
        //VirtualPad2[11 - i]->SetGrid();
      } else {
        pad2->cd(i+1);
        VirtualPad2[i] = (TPad *)(pad2->cd(11 - i+1)); //Tole nastaviš zato, da lahko daš Log skalo
        VirtualPad2[i]->SetLogy(1);
        //VirtualPad2[i]->SetLeftMargin(.05);
        //VirtualPad2[i]->SetRightMargin(.05);
        //VirtualPad2[i]->SetGrid();
      }
      for (int j=0;j<12;j++) {
        if (!direction) h->GetZaxis()->SetRange(m.koordinatniSistem[j][i]+1,m.koordinatniSistem[j][i]+1);
        else h->GetZaxis()->SetRange(m.koordinatniSistem[i][j]+1,m.koordinatniSistem[i][j]+1);

        slice[j] = (TH2D *)h->Project3D("pyx");

        if (!direction) {
          sprintf(name,"PX: (%d,%d)",j,i);
          p[j] = slice[j]->ProjectionX(name,i+1,i+1);
          sprintf(name,"Projection X of row %d",i);
        } else {
          sprintf(name,"PY: (%d,%d)",i,j);
          p[j] = slice[j]->ProjectionY(name,i+1,i+1);
          sprintf(name,"Projection Y of column %d",i);
        }
      axis = p[j]->GetXaxis();

      if(!direction) zamenjan[j] = new TH1D(name,p[j]->GetTitle(),axis->GetNbins(),-32.9,33.6);
      else zamenjan[j] = new TH1D(name,p[j]->GetTitle(),axis->GetNbins(),-33.97,32.55);

      for (int k = 0; k < axis->GetNbins(); k++) zamenjan[j]->SetBinContent(k+1,p[j]->GetBinContent(k+1));

      if(!direction) VirtualPad2[11]->SetBottomMargin(.17);
      else VirtualPad2[0]->SetBottomMargin(.17);

      zamenjan[j]->SetLineWidth(2);

      zamenjan[j]->SetTitle(name);
      zamenjan[j]->SetTitleOffset(1.5);

      zamenjan[j]->GetYaxis()->SetRangeUser(1,10000);
      zamenjan[j]->GetYaxis()->SetTickLength(0.01);
      zamenjan[j]->GetYaxis()->SetTitleFont(vrstaPisave);
      zamenjan[j]->GetYaxis()->SetLabelFont(vrstaPisave);
      zamenjan[j]->GetYaxis()->SetLabelSize(0.05);
      zamenjan[j]->GetYaxis()->SetLabelColor(kBlack);
      zamenjan[j]->GetYaxis()->SetTitle("Number of Events");
      zamenjan[j]->GetYaxis()->SetNdivisions(0);
      zamenjan[j]->GetYaxis()->CenterTitle();
      zamenjan[j]->GetYaxis()->SetTitleSize(0.05);
      zamenjan[j]->GetYaxis()->SetTitleOffset(.5);
      zamenjan[j]->GetYaxis()->SetTitleColor(kWhite);

      zamenjan[j]->GetXaxis()->SetTickLength(0.1);
      zamenjan[j]->GetXaxis()->SetTitleFont(vrstaPisave);
      zamenjan[j]->GetXaxis()->SetLabelFont(vrstaPisave);
      zamenjan[j]->GetXaxis()->SetLabelSize(0.15);
      zamenjan[j]->GetXaxis()->SetLabelColor(kBlack);
      zamenjan[j]->GetXaxis()->SetLabelOffset(.05);
      zamenjan[j]->GetXaxis()->SetTitle("Incident light position (mm)");
      //zamenjan[j]->GetXaxis()->SetNdivisions(0);
      //zamenjan[j]->GetXaxis()->CenterTitle();
      zamenjan[j]->GetXaxis()->SetTitleSize(0.01);
      zamenjan[j]->GetXaxis()->SetTitleColor(kWhite); //zato ker ga ne moreš pozicionirat
      zamenjan[j]->GetXaxis()->SetTitleOffset(.5);

      pNoise = noise(zamenjan[j]);
      for (int k=1;k<=zamenjan[j]->GetSize();k++) zamenjan[j]->SetBinContent(k,zamenjan[j]->GetBinContent(k)-pNoise);

      if (j<6) zamenjan[j]->SetLineColor(kWhite+color[j]);
      else zamenjan[j]->SetLineColor(kWhite+color[j-6]);
      zamenjan[j]->SetLineWidth(1);
      if (j==0) zamenjan[j]->DrawCopy();
      else zamenjan[j]->DrawCopy("SAME");
         
         if (!direction) sprintf(text_for_STR, "Scan_1D_X_%s_i_%d_j_%d", HAPDserialNumber.c_str(),i,j);
         else            sprintf(text_for_STR, "Scan_1D_Y_%s_i_%d_j_%d", HAPDserialNumber.c_str(),i,j);
        SaveToRootAddTH1DCopy(zamenjan[j], text_for_STR);

      /*
        //Comment the "zamenjan[j]" if you want to se scale in position steps! 1000 steps = 0.3959mm
        p[j]->SetLineWidth(2);

        p[j]->SetTitle("");
        p[j]->SetTitleOffset(1.5);

        p[j]->GetYaxis()->SetRangeUser(1,10000);
        p[j]->GetYaxis()->SetTickLength(0.01);
        p[j]->GetYaxis()->SetTitleFont(vrstaPisave);
        p[j]->GetYaxis()->SetLabelFont(vrstaPisave);
        p[j]->GetYaxis()->SetLabelSize(0.05);
        p[j]->GetYaxis()->SetLabelColor(kBlack);
        p[j]->GetYaxis()->SetTitle("Stevilo dogodkov");
        p[j]->GetYaxis()->SetNdivisions(0);
        p[j]->GetYaxis()->CenterTitle();
        p[j]->GetYaxis()->SetTitleSize(0.05);
        p[j]->GetYaxis()->SetTitleOffset(.5);
        p[j]->GetYaxis()->SetTitleColor(kWhite);

        p[j]->GetXaxis()->SetTickLength(0.1);
        p[j]->GetXaxis()->SetTitleFont(vrstaPisave);
        p[j]->GetXaxis()->SetLabelFont(vrstaPisave);
        p[j]->GetXaxis()->SetLabelSize(0.15);
        p[j]->GetXaxis()->SetLabelColor(kBlack);
        p[j]->GetXaxis()->SetLabelOffset(.05);
        p[j]->GetXaxis()->SetTitle("Pozicija vpadne svetlobe (korak mizice)");
        //p[j]->GetXaxis()->SetNdivisions(0);
        //p[j]->GetXaxis()->CenterTitle();
        p[j]->GetXaxis()->SetTitleSize(0.01);
        p[j]->GetXaxis()->SetTitleColor(kWhite); //zato ker ga ne moreš pozicionirat
        p[j]->GetXaxis()->SetTitleOffset(.5);

        pNoise = noise(p[j]);
        for (int k=1;k<=p[j]->GetSize();k++) p[j]->SetBinContent(k,p[j]->GetBinContent(k)-pNoise);

        if (j<6) p[j]->SetLineColor(kWhite+color[j]);
        else p[j]->SetLineColor(kWhite+color[j-6]);
        p[j]->SetLineWidth(1);
        if (j==0) p[j]->DrawCopy();
        else p[j]->DrawCopy("SAME");
      */

      }
    }
    c->Modified();
    c->Update();

    sprintf(buf,"%04d_%s_linearScan",runNumber,HAPDserialNumber.c_str());
    c2 = new TCanvas(buf,buf,0,0,2000,2000);
    c2->cd();
    c2pad2 = new TPad("c2pad2","c2pad2",0.125,0,.875,0.75,0,0);
    c2pad2->Draw();
    c2pad2->cd();
      c->DrawClonePad();
    c2->cd();
    c2pad1 = new TPad("c2pad1","c2pad1",0.2,0.74,.8,1,0,0);
    c2pad1->Draw();
    c2pad1->cd();
      c2pad1->SetRightMargin(.15);
      c2pad1->SetLogz();
      gStyle->SetTitleFontSize(0.07);
      sprintf(buf,"hxy%d_sum_0",HAPDnumber);
      //~ sum = (TH2D *) gDirectory->Get(buf);
      sum = (TH2D *) CurrentDirectory->Get(buf);
      if(!direction) sprintf(buf,"Scan in X direction");
      else sprintf(buf,"Scan in Y direction");
      sum->SetTitle(buf);
      sum->GetZaxis()->SetRangeUser(1,10000);
      sum->Draw("COLZ");

       
         if (!direction) sprintf(text_for_STR, "Scan_2D_X_%s", HAPDserialNumber.c_str());
         else            sprintf(text_for_STR, "Scan_2D_Y_%s", HAPDserialNumber.c_str());
        SaveToRootAddTH2DCopy(sum, text_for_STR);

    if (save==1){
      switch (direction) {
        case 0: sprintf(pdfname,"../modules/%04d/%04d_%s_2_2DX.pdf",runNumber,runNumber,HAPDserialNumber.c_str());break;
        case 1: sprintf(pdfname,"../modules/%04d/%04d_%s_3_2DY.pdf",runNumber,runNumber,HAPDserialNumber.c_str());break;
      }
      c->SaveAs(pdfname,"pdf");
    } else if (save==2){
      sprintf(pdfname,"../modules/%04d/%04d_%s.pdf",runNumber,runNumber,HAPDserialNumber.c_str());
      /*switch (direction) {
        case 0: sprintf(pdfname,"../modules/%04d/%04d_%s.pdf",runNumber,runNumber,HAPDserialNumber.c_str());break;
        case 1: sprintf(pdfname,"../modules/%04d/%04d_%s.pdf)",runNumber,runNumber,HAPDserialNumber.c_str());break;
      }*/

      c2->SaveAs(pdfname,"pdf");
    }
   
    sprintf(text_for_STR,"../modules/%04d/%04d_%s_out.root",runNumber,runNumber,HAPDserialNumber.c_str());
    SaveToRootWrite(text_for_STR, HAPDserialNumber.c_str());
  }

  return 0;
}

float noise(TH1D * proj) {
  float nBin=proj->GetSize(); //ugotovi koliko binov je v histogramu
  float wholeAverage=0;   //sem da povprečje celotnega kanala
  float noise=0;    //sem da povprečn šum
  int j=0;
  for (int i=1;i<=nBin;i++) wholeAverage+=proj->GetBinContent(i)/nBin;
  for (int i=1;i<=nBin;i++) {
    if (proj->GetBinContent(i)<1.1*wholeAverage) {
      noise+=proj->GetBinContent(i);
      j++;
    }
  }
  if(j!=0) return noise/j;
  else return 0;
}