#include "TROOT.h"
 
#include "TFile.h"
 
#include "TBenchmark.h"
 
#include "TH1F.h"
 
#include "TH2F.h"
 
#include "TH3F.h"
 
#include "TCanvas.h"
 
#include "TStyle.h"
 
#include "TPad.h"
 
#include "TF1.h"
 
#include "TGraph.h"
 
#include "TSpectrum.h"
 
#include "stdio.h"
 
 
 
#include "include/RTUtil.h"
 
 
 
double getNoise(TH2F*, int, int);
 
 
 
int thresholdScan(char filename[256] = "test", char plopt[256]="th", int chXstart=0, int chXend=7, int chYstart=0, int chYend=7, bool debug = false)
 
{
 
  const int c_nChannels = 64;
 
  const double c_xOffset = 1; // mm
 
  const double c_yOffset = 0.7;
 
  
 
  int map[8][8]={{32,34,53,55,40,42,61,63},
 
                 {48,50,37,39,56,58,45,47},
 
                 {33,35,52,54,41,43,60,62},
 
                 {49,51,36,38,57,59,44,46},
 
                 {17,19,4,6,25,27,12,14},
 
                 {1,3,20,22,9,11,28,30},
 
                 {16,18,5,7,24,26,13,15},
 
                 {0,2,21,23,8,10,29,31}
 
                };
 
                
 
  // Set draw style              
 
  RTSetStyle(gStyle);
 
  
 
  // open the file with histograms
 
  char fnameroot[256];
 
  TFile* rootfile;
 
        sprintf(fnameroot
, "root/%s.root", filename
);   
        rootfile = (TFile *) gROOT->FindObject(filename); 
 
        if(rootfile==NULL) rootfile = new TFile(fnameroot);
 
        if(rootfile==NULL) {
 
          printf("Cannot open root file %s!!!\n",fnameroot
);   
          return(0);
 
        }
 
 
 
  if (strstr(plopt
, "th") != NULL
) {  
   TCanvas* canvas1 = new TCanvas("canvas1","",800,800);
 
   canvas1->cd();
 
   //gPad->SetLogz();
 
   //canvas1->SetLogz();
 
   TH2F* h_threshold = (TH2F*) rootfile->Get("h_threshold");
 
   h_threshold->SetTitleOffset(1.5,"y");
 
   //h_threshold->GetZaxis()->SetRangeUser(0,1000);
 
   h_threshold->SetContour(20);
 
   
 
   h_threshold->Draw("colz");
 
   
 
   TCanvas* canvas2 = new TCanvas("canvas2","",1600,800);
 
   //canvas2->Divide(2);
 
   int channel = map[chXstart][chXend];
 
   TH1D* h_projection1 = h_threshold->ProjectionY("",channel+1,channel+1);
 
   canvas2->cd();
 
   //h_projection1->GetYaxis()->SetRangeUser(0,1000);
 
   //gPad->SetLogy();
 
   h_projection1->SetTitle(";Threshold [V]; Events");
 
   h_projection1->Draw();
 
   /*
 
   TH1D* h_projection2 = h_threshold->ProjectionY("Ch 38",39,39);
 
   canvas2->cd(2);
 
   //gPad->SetLogy();
 
   h_projection2->Draw(); */
 
  }
 
  
 
  if(strstr(plopt
, "tdc") != NULL
) {  
    TCanvas *canvas21 = new TCanvas("canvas21","canvas21",1600,800);
 
    TH3F* h0 = (TH3F*) rootfile->Get("h_correctedTDC");
 
          Int_t binsX = h0->GetXaxis()->GetNbins();
 
    Int_t minX  = h0->GetXaxis()->GetFirst();
 
    Int_t maxX  = h0->GetXaxis()->GetLast()+1;
 
    Int_t binsY = h0->GetYaxis()->GetNbins();
 
    Int_t minY  = h0->GetYaxis()->GetFirst();
 
    Int_t maxY  = h0->GetYaxis()->GetLast()+1;
 
    Int_t binsZ = h0->GetZaxis()->GetNbins();
 
    Int_t minZ  = h0->GetZaxis()->GetFirst();
 
    Int_t maxZ  = h0->GetZaxis()->GetLast()+1;
 
    Double_t xLowUser  = h0->GetXaxis()->GetBinLowEdge(minX);
 
    Double_t xUpUser = h0->GetXaxis()->GetBinUpEdge(maxX);
 
    Double_t yLowUser  = h0->GetYaxis()->GetBinLowEdge(minY);
 
    Double_t yUpUser = h0->GetYaxis()->GetBinUpEdge(maxY);
 
    
 
    canvas21->Divide(2);
 
    //h0->Draw();
 
    canvas21->cd(1);
 
    //h0->Project3D("xy")->Draw("colz");
 
    //canvas21->cd(2);
 
    //h0->Project3D("yz")->Draw("colz");
 
    //canvas21->cd(3);
 
    TH2D* h_correctedTDC = (TH2D*) h0->Project3D("xz");
 
    //h0->GetZaxis()->SetRangeUser(-5,5);
 
    //h0->Project3D("xzo")->Draw("colz");
 
    h_correctedTDC->SetTitle("; t [ns]; Channel");
 
    h_correctedTDC->Draw("colz");
 
    /*
 
    TH1F* tdc1 = new TH1F("tdc1",";TDC [ns];Events",binsZ, minZ, maxZ);
 
    //for(int j=minY; j<maxY; j++) {
 
      for(int k=minZ; k<maxZ; k++) {
 
        double signal = h0->GetBinContent(1,1,k);
 
        tdc1->Fill(k,signal);
 
        //}
 
        }
 
    tdc1->Draw();
 
    */
 
    
 
    TH2D* h_timeWalk = (TH2D*) h0->Project3D("zy");
 
    canvas21->cd(2);
 
    h_timeWalk->SetTitle(";Threshold [V]; t [ns]");
 
    h_timeWalk->Draw("colz");
 
  }
 
  
 
  if(strstr(plopt
,"16") != NULL
)   
  {
 
  TH2F* h_threshold = (TH2F*) rootfile->Get("h_threshold");
 
  TCanvas* canvas = new TCanvas("canvas","",1600,1600);
 
  canvas->cd();
 
  TVirtualPad *main = new TPad("main","main",0,0,1,1,10,1);
 
  main->Draw();
 
  main->Divide(4,4);
 
  for(int i=chXstart; i<chXend; i++) {
 
    for(int j=chYstart; j<chYend; j++) {
 
      int channel = map[i][j];
 
      TH1D* h_projection = h_threshold->ProjectionY("",channel+1,channel+1);
 
      int canvasPosition = i-chXend+4*(chYend-j)+1;
 
      printf(" %d ", canvasPosition
);  
      main->cd(canvasPosition);
 
      char name[128];
 
      sprintf(name
,"Channel %d",channel
);  
      h_projection->SetTitle(name);
 
      h_projection->DrawCopy();
 
    }
 
  }
 
  }
 
  
 
  if( strstr(plopt
, "all") != NULL 
) {  
    TCanvas *canvas2 = new TCanvas("canvas2","Hits x;;",2000,2000);
 
    TCanvas *canvas3 = new TCanvas("canvas3","Hits y;;",2000,2000);
 
    canvas2->Divide(8,8);
 
    canvas3->Divide(8,8);
 
    TH1F* h_hitsx;
 
    TH1F* h_hitsy;
 
    for(int i=0; i<c_nChannels; i++) {
 
      canvas2->cd(i+1);
 
      char hname[128];
 
      h_hitsx = (TH1F*)rootfile->Get(hname);
 
      h_hitsx->Draw();
 
      canvas3->cd(i+1);
 
      h_hitsy = (TH1F*)rootfile->Get(hname);
 
      h_hitsy->Draw();  
 
    }
 
  }
 
  
 
  if( strstr(plopt
, "x") != NULL 
) {  
    TCanvas *canvas10 = new TCanvas("canvas10","Ch x;;",500,500);
 
    TH1F* h_hitsx;
 
    canvas10->cd();
 
    char hname[128];
 
    sprintf(hname
, "hnhitsx%d", chXstart
);  
    h_hitsx = (TH1F*)rootfile->Get(hname);
 
    h_hitsx->Draw("colz"); 
 
  }
 
  
 
  if( strstr(plopt
, "y") != NULL 
) {  
    TCanvas *canvas11 = new TCanvas("canvas11","Ch x;;",500,500);
 
    TH1F* h_hitsy;
 
    canvas11->cd();
 
    char hname[128];
 
    sprintf(hname
, "hnhitsy%d", chXstart
);  
    h_hitsy = (TH1F*)rootfile->Get(hname);
 
    h_hitsy->Draw();
 
  }
 
  
 
  if( strstr(plopt
, "share") != NULL 
) {  
   /*TCanvas *canvas4 = new TCanvas("canvas1","canvas1",1000,1000);
 
   int nChannels = chYend-chYstart+1;
 
   int ncols = nChannels/2;
 
   printf("nch %d nch\\2 %d\n", nChannels, ncols);
 
   canvas4->Divide(2,ncols);
 
   TH1F* h_hitsy;
 
   for(int i=chYstart; i<=chYend; i++){
 
     canvas4->cd(i-chYstart+1);
 
     char hname[128];
 
     int chPosition = map[0][i];
 
     sprintf(hname, "hnhitsy%d", chPosition);
 
     h_hitsy = (TH1F*)rootfile->Get(hname);
 
     h_hitsy->Draw();
 
   }*/
 
   
 
   TCanvas *canvas4 = new TCanvas("canvas4","canvas4",500,500);
 
   canvas4->cd();
 
   for(int i=chXstart; i<=chXend; i++) {
 
     TH1F* h_hitsx;
 
     char hname[128];
 
     int chPosition = map[i][chYstart];
 
     sprintf(hname
, "hnhitsx%d", chPosition
);  
     h_hitsx = (TH1F*)rootfile->Get(hname);
 
     h_hitsx->SetTitle("Scan X;x [mm]; Entries");
 
     h_hitsx->GetYaxis()->SetTitleOffset(1.3);
 
     h_hitsx->SetStats(0);
 
     if (i == chXstart) 
 
      h_hitsx->Draw();
 
     else {
 
      h_hitsx->SetLineColor(i+1);
 
      h_hitsx->Draw("same");
 
     }
 
   }
 
   //sprintf(fullname, "ps/%s_Yshare.eps", filename);
 
         //canvas4->SaveAs(fullname);
 
   
 
   TCanvas *canvas5 = new TCanvas("canvas5","canvas5",500,500);
 
   canvas5->cd();
 
   for(int i=chYstart; i<=chYend; i++) {
 
     TH1F* h_hitsy;
 
     char hname[128];
 
     int chPosition = map[chXstart][i];
 
     sprintf(hname
, "hnhitsy%d", chPosition
);  
     h_hitsy = (TH1F*)rootfile->Get(hname);
 
     h_hitsy->SetTitle("Scan Y;y [mm]; Entries");
 
     h_hitsy->GetYaxis()->SetTitleOffset(1.3);
 
     h_hitsy->SetStats(0);
 
     if (i == chYstart) 
 
      h_hitsy->Draw();
 
     else {
 
      h_hitsy->SetLineColor(i+1);
 
      h_hitsy->Draw("same");
 
     }
 
   }
 
   //sprintf(fullname, "ps/%s_Yshare.eps", filename);
 
         //canvas5->SaveAs(fullname);
 
  }
 
  
 
  /** Draws the signal from 8 channels in x-row
 
    * for one specific y bin, so the background and cross-talk
 
    * can be estimated.
 
    * Draws also a 2d scan of these channels.
 
    */
 
  if (strstr(plopt
, "line") != NULL
) {  
    TCanvas* canvas6 = new TCanvas("canvas6","canvas6",500,500);
 
    canvas6->cd(0);
 
    gStyle->SetOptStat(0);
 
    
 
    TH2F* h0 = (TH2F*) rootfile->Get("h2d0");
 
          Int_t binsX = h0->GetXaxis()->GetNbins();
 
    Int_t minX  = h0->GetXaxis()->GetFirst();
 
    Int_t maxX  = h0->GetXaxis()->GetLast()+1;
 
    Int_t binsY = h0->GetYaxis()->GetNbins();
 
    Int_t minY  = h0->GetYaxis()->GetFirst();
 
    Int_t maxY  = h0->GetYaxis()->GetLast()+1;
 
    Double_t xLowUser  = h0->GetXaxis()->GetBinLowEdge(minX);
 
    Double_t xUpUser = h0->GetXaxis()->GetBinUpEdge(maxX);
 
    Double_t yLowUser  = h0->GetYaxis()->GetBinLowEdge(minY);
 
    Double_t yUpUser = h0->GetYaxis()->GetBinUpEdge(maxY);
 
    if (debug
) printf("xLow %f xUp %f\n",xLowUser
,xUpUser
);  
    
 
    //! 1-dimension position in x vs. hits
 
    TH2F* h[8];
 
    TH1F* h_line[8];
 
    for(int j=0; j<8; j++) {
 
      h_line[j] = new TH1F("h_line", "h_line", binsX, xLowUser, xUpUser);
 
    }
 
    
 
    for(int j=chXstart; j<=chXend; j++) {
 
      int chPosition = map[j][chYstart];
 
      char hname[128];
 
      sprintf(hname
, "h2d%d", chPosition
);    
      int histogram = j;
 
      h[histogram] = (TH2F *) rootfile->Get(hname);
 
      int noise = getNoise(h[histogram], 1, 160);
 
      for(int k=minX; k<=maxX; k++) {
 
        int l=chYstart*20+12;
 
        //for(int l=12; l<=16; l++) {
 
          double signal = h[histogram]->GetBinContent(k,l);
 
          //signal -= noise;
 
          //signal /= 5*10000.0;
 
          double eta 
= -log(1 - signal
);  
          double x = k*(xUpUser-xLowUser)/double(binsX);
 
          //double y = l*(yUpUser-yLowUser)/double(binsY);
 
          h_line[j]->Fill(x-c_xOffset, signal);
 
        //}
 
      }
 
      if (j == chXstart) {
 
        h_line[j]->SetTitle("SiPM#2 w/o noise subtraction;x[mm];Hits");
 
        //h_line[j]->GetYaxis()->SetRangeUser(-0.05, 0.3);
 
        //h_line[j]->GetYaxis()->SetRangeUser(-50, 2500);
 
        h_line[j]->Draw("");
 
      }
 
      else {
 
        h_line[j]->SetLineColor(j+1);
 
        h_line[j]->Draw("same");
 
      }
 
    }
 
   
 
    
 
    //! 2d scan
 
    TCanvas* canvas61 = new TCanvas("canvas61","canvas61",8*200,300);
 
    canvas61->cd();
 
    TH2F* h_corrected = new TH2F("h_corrected","h_corrected",binsX,xLowUser,xUpUser, binsY,yLowUser,yUpUser);
 
    for(int i=chXstart; i<=chXend; i++) {
 
      //int canvasPosition = nX*(i-chYstart)+(j-chXstart)+1;
 
      //int canvasPosition = nX*(chYend-i)+chXstart+1;
 
      //if (debug) printf("canvas %d\n",canvasPosition);
 
        int chPosition = map[i][chYstart];
 
        char hname[128];
 
              sprintf(hname
, "h2d%d", chPosition
);    
              int histogram = i;
 
              h[histogram] = (TH2F *) rootfile->Get(hname);
 
              int noise = getNoise(h[histogram], 1, 100);
 
              
 
              for(int k=minX; k<=maxX; k++) {
 
          for(int l=minY; l<=maxY; l++) {
 
            int signal = h[histogram]->GetBinContent(k,l); // detected
 
            //p /= 10000.;
 
            //double p0 = 1.0 - p; // events with zero photons
 
            //double eta = (-log(p0) * p0 ) / (1-p0-0.00001);
 
            //double eta = -log(p0);
 
            //printf("p=%f p0=%f log(p0)=%f eta=%f\n",p,p0,log(p0),eta);      
 
            //double signal = ((p - noise) > 0.1) ? (p-noise) : 0.1;
 
            double p = signal - noise;
 
            p /= 10000.0;
 
            double eta 
= -log(1 - p
);  
            double x = k*(xUpUser-xLowUser)/double(binsX);
 
            double y = l*(yUpUser-yLowUser)/double(binsY);
 
            h_corrected->Fill(x-c_xOffset, y-c_yOffset, eta);
 
          }
 
        }
 
    }
 
    h_corrected->SetTitle("SiPM#2 n_pe = - ln(P0);x[mm];y[mm]");
 
    h_corrected->GetZaxis()->SetRangeUser(-0.05,0.30);
 
    h_corrected->Draw("colz");
 
    
 
  }
 
  
 
  /** Draws the sum of the channels
 
    * Each channel is a 2d plot
 
    * Intended for the study of 1 channel
 
    */
 
  if (strstr(plopt
, "2d") != NULL
) {  
    
 
    int nX = chXend - chXstart + 1;
 
    int nY = chYend - chYstart + 1;
 
    TCanvas* canvas7 = new TCanvas("canvas7","canvas7", nX*400,nY*400);
 
    printf("nx %d ny %d\n",nX
,nY
);  
    canvas7->Divide(nX,nY);
 
    for(int i=chYstart; i<=chYend; i++) {
 
      for(int j=chXstart; j<=chXend; j++) {
 
      //int canvasPosition = nX*(i-chYstart)+(j-chXstart)+1;
 
      int canvasPosition = nX*(chYend-i)+(j-chXstart)+1;
 
      if (debug
) printf("canvas %d\n",canvasPosition
);  
        canvas7->cd(canvasPosition);
 
        char hname[128];
 
        int chPosition = map[j][i];
 
        sprintf(hname
, "h2d%d", chPosition
);  
        TH2F* h_2d = (TH2F*)rootfile->Get(hname);
 
        h_2d->Draw("colz");
 
      } //x
 
    }
 
    
 
    // Number of photoelectrons - Poissonian correction
 
    TCanvas* canvas8 = new TCanvas("canvas8","canvas8", 1000,1000);
 
    canvas8->cd();
 
    gStyle->SetOptStat(0);
 
      char hname[128];
 
      int chPosition = map[1][2];
 
      sprintf(hname
, "h2d%d", chPosition
);  
      TH2F* h_2d = (TH2F*)rootfile->Get(hname);
 
 
 
      Int_t binsX = h_2d->GetXaxis()->GetNbins();
 
      Int_t minX  = h_2d->GetXaxis()->GetFirst();
 
      Int_t maxX  = h_2d->GetXaxis()->GetLast()+1;
 
      Int_t binsY = h_2d->GetYaxis()->GetNbins();
 
      Int_t minY  = h_2d->GetYaxis()->GetFirst();
 
      Int_t maxY  = h_2d->GetYaxis()->GetLast()+1;
 
      Double_t xLowUser  = h_2d->GetXaxis()->GetBinLowEdge(minX);
 
      Double_t xUpUser   = h_2d->GetXaxis()->GetBinUpEdge(maxX);
 
      Double_t yLowUser  = h_2d->GetYaxis()->GetBinLowEdge(minY);
 
      Double_t yUpUser =   h_2d->GetYaxis()->GetBinUpEdge(maxY);
 
      if (debug
) printf("xLow %f xUp %f\n",xLowUser
,xUpUser
);  
      TH2F* h_corrected = new TH2F("h_corrected","h_corrected",binsX, xLowUser, xUpUser, binsY, yLowUser, yUpUser);
 
      
 
      double noise = getNoise(h_2d, 1, 89);
 
      if(debug
) printf("Noise = %f\n", noise
);  
      for(int k=minX; k<=maxX; k++) {
 
        for(int j=minY; j<=maxY; j++) {
 
          double signal = h_2d->GetBinContent(k,j); // detected
 
          //double p = ((signal - noise) > 1) ? (signal-noise) : 1;
 
          double p = signal - noise;
 
          p /= 10000.;
 
          double p0 = 1.0 - p; // events with zero photons
 
          //double eta = (-log(p0) * p0 ) / (1-p0-0.00001);
 
          double eta 
= -log(p0
); // constant of the poissonian statistics  
          if (debug
) printf("p=%f p0=%f log(p0)=%f eta=%f\n",p
,p0
,log(p0
),eta
);  
          double x = k*(xUpUser-xLowUser)/double(binsX);
 
          double y = j*(yUpUser-yLowUser)/double(binsY);
 
          h_corrected->Fill(x+3,y+8, eta);
 
        }
 
       }
 
      h_corrected->SetTitle("n_pe = - ln P(0);x[mm];y[mm]");
 
      h_corrected->GetZaxis()->SetRangeUser(-0.05,0.3);
 
      h_corrected->Draw("colz");
 
      
 
      // collection efficiency
 
      int nPoints =0;
 
      double efficiency=0;
 
      for (int i=18; i<=58; i++) {
 
        for (int j=19; j<=59; j++) {
 
          double signal = h_corrected->GetBinContent(i,j);
 
          if(debug
) printf("signal %f\n",signal
);  
          efficiency += signal;
 
          nPoints++;
 
        }
 
      }  
 
    printf("Signal sum = %f\n   # of points = %d\n",efficiency
,nPoints
);  
  }
 
  
 
  /** Draws the sum of channel signals
 
    * Each channel is a 2d ('h2d') histogram
 
    * Suitable for 8x8 chs scan
 
    */
 
  if( strstr(plopt
, "sum") != NULL 
) {  
    int nX = chXend - chXstart + 1;
 
    int nY = chYend - chYstart + 1;
 
          TCanvas* canvas12 = new TCanvas("canvas12","c2",8*200, 8*200);
 
          canvas12->cd();
 
          gStyle->SetOptStat(0);
 
 
 
    // final histogram parameters
 
    TH2F* h0 = (TH2F*) rootfile->Get("h2d0");
 
          Int_t binsX = h0->GetXaxis()->GetNbins();
 
    Int_t minX  = h0->GetXaxis()->GetFirst();
 
    Int_t maxX  = h0->GetXaxis()->GetLast()+1;
 
    Int_t binsY = h0->GetYaxis()->GetNbins();
 
    Int_t minY  = h0->GetYaxis()->GetFirst();
 
    Int_t maxY  = h0->GetYaxis()->GetLast()+1;
 
    Double_t xLowUser  = h0->GetXaxis()->GetBinLowEdge(minX);
 
    Double_t xUpUser = h0->GetXaxis()->GetBinUpEdge(maxX);
 
    Double_t yLowUser  = h0->GetYaxis()->GetBinLowEdge(minY);
 
    Double_t yUpUser = h0->GetYaxis()->GetBinUpEdge(maxY);
 
    if (debug
) printf("xLow %f xUp %f\n",xLowUser
,xUpUser
);  
    TH2F* h_corrected = new TH2F("h_corrected","h_corrected",binsX,xLowUser,xUpUser, binsY,yLowUser,yUpUser);
 
    TH2F* h[9];
 
    
 
    // 2d histogram noise subtraction and poisson scaling
 
    for(int i=chYstart; i<=chYend; i++) {
 
      for(int j=chXstart; j<=chXend; j++) {
 
        int chPosition = map[j][i];
 
        char hname[128];
 
              sprintf(hname
, "h2d%d", chPosition
);    
              int histogram = nX*(i-chYstart)+(j-chXstart);
 
              h[histogram] = (TH2F *) rootfile->Get(hname);
 
              int noise = getNoise(h[histogram], 1, 170);
 
              if (debug
) printf("noise: %d\n",noise
);  
              for(int k=minX; k<=maxX; k++) {
 
          for(int l=minY; l<=maxY; l++) {
 
            int signal = h[histogram]->GetBinContent(k,l); // detected
 
            //double p = ((signal - noise) > 0.1) ? (signal-noise) : 0.1;
 
            double p = signal - noise;
 
            p /= 10000.;
 
            double p0 = 1.0 - p; // events with zero photons
 
            //double eta = (-log(p0) * p0 ) / (1-p0-0.00001);
 
            //printf("p=%f p0=%f log(p0)=%f eta=%f\n",p,p0,log(p0),eta);
 
            double x = k*(xUpUser-xLowUser)/double(binsX);
 
            double y = l*(yUpUser-yLowUser)/double(binsY);
 
            h_corrected->Fill(x-c_xOffset, y-c_yOffset, signal);
 
          }
 
        }     
 
      
 
      }
 
    }
 
  
 
    h_corrected->SetTitle("SiPM#2 n_p.e.;x[mm];y[mm]");
 
    //h_corrected->GetZaxis()->SetRangeUser(-0.05,.30);
 
    h_corrected->Draw("colz");
 
    
 
    TCanvas* canvas13 = new TCanvas("canvas13","canvas13",600,300);
 
    canvas13->Divide(2);
 
    canvas13->cd(1);
 
    //h[16]->Draw("colz");
 
    canvas13->cd(2);
 
    //h[8]->Draw("colz");
 
  }
 
    
 
  return(0);
 
}
 
 
 
/** Function calculates the noise from one channel
 
  * it runs through the bins along x and returns the average value
 
  */
 
double getNoise(TH2F* histogram, int yStart, int yEnd)
 
{
 
  double noise=0;
 
  int count=0;
 
  for(int j=yStart; j<yEnd; j++) {
 
    double value = histogram->GetBinContent(j,2);
 
    //if (noise < value) noise = value;
 
    noise += value;
 
    count++;
 
    }
 
  return (noise/double(count));
 
}